courses:bin:program [CourseWare Wiki]

Lecture	Date	Lecturer	Topics	Slides	References
1	19.2.	JK	Intro, sample bioinformatics tasks.	intro
2	26.2.	JK	Sequencing algorithms, fragment assembly.	assembly	Nagarajan13, Compeau11
3	4.3.	JK	Biological sequence alignment.	alignment	Durbin's book, ch 2,6
4	11.3.	JK	BLAST algorithm and its modifications.	multi align, BLAST	Altschul97
5	18.3.	JK	Motif discovery.	Motif discovery	Dhaeseleer06
6	25.3.	JK	Phylogenetic trees, hierarchical clustering.	phylogeny	Durbin's book, ch 7
-	1.4.	-	Easter Monday
7	8.4.	JK	Phylogenetic trees, parsimony and probabilistic methods.	see the previous lecture	Durbin's book, ch 8
8	15.4.	JK	Markov models, Markov chains.	Markov chains	Durbin's book, ch 3
9	22.4.	JK	Hidden Markov models, profile HMMs, gene finidng.	HMMs	Burge97, HMM_algs
10	29.4.	JK	Gene expression profiling.	DGE	Love14
11	6.5.	JK	Gene ontology, gene/protein function prediction.	Gene ontology	GOingStrong19, GOLabeler, GSEA
12	13.5.	JK	RNA secondary structure prediction	RNA secondary	Eddy04, Vicens22, Durbin's book, ch 9,10
13	20.5.	JK	Modeling of higher protein structures, protein databases.	Protein folding	AlphaFold2, Dill12, Rost98, Lathorp96, Threading