courses:bin:program [CourseWare Wiki]

Lecture	Date	Lecturer	Topics	Slides	References
1	18.2.	JK	Intro, sample bioinformatics tasks.	intro
2	25.2.	JS	Biological sequence alignment.	alignment, alignment_2p, linear space	Durbin's book, ch 2,6
3	4.3.	JK	BLAST algorithm and its modifications.	multi align, BLAST	Altschul97
4	11.3.	JK	Sequencing algorithms, fragment assembly.	assembly	Nagarajan13, Compeau11
5	18.3.	JK	Phylogenetic trees, hierarchical clustering.	phylogeny,dist_based	Durbin's book, ch 7
6	25.3.	JK	Phylogenetic trees, parsimony and probabilistic methods.	parsimony, probablistic	Durbin's book, ch 8
7	1.4.	JK	Markov models.	Markov chains	Durbin's book, ch 3
8	8.4.	JK	Markov models of genomic sequences, gene finidng, profile HMMs.	HMM,applications	Burge97
9	15.4.	JS	High-throughput data analysis, marker detection, predictive modeling.	microarray, DeSEQ	Goeman07
-	22.4.	-	Easter Monday
10	29.4.	JK	RNA secondary structure prediction	RNA secondary	Eddy04, Durbin's book, ch 9,10
11	6.5.	JK	Modeling of higher protein structures, protein databases.	Protein structure prediction, Threading	Dill12, Rost98, Lathorp96
12	13.5.	JK	Gene ontology, gene/protein function prediction.	gfp-intro.pdf
13	20.5.	JS	Network inference and modeling.	Network inference	Sachs05