courses:bin:program [CourseWare Wiki]

Lecture	Date	Lecturer	Topics	Slides	References
1	15.2.	JK	Intro, sample bioinformatics tasks.	intro
2	22.2.	JK	Sequencing algorithms, fragment assembly.	assembly	Nagarajan13, Compeau11
3	1.3.	JK	Biological sequence alignment.	alignment	Durbin's book, ch 2,6
4	8.3.	JK	BLAST algorithm and its modifications.	multi align, BLAST	Altschul97
5	15.3.	JK	Phylogenetic trees, hierarchical clustering.	phylogeny	Durbin's book, ch 7
6	22.3.	JK	Phylogenetic trees, parsimony and probabilistic methods.	see the previous lecture	Durbin's book, ch 8
7	29.3.	JK	Markov models, Markov chains.	Markov chains	Durbin's book, ch 3
-	5.4.	-	Easter Monday
8	12.4.	JK	Hidden Markov models, profile HMMs, gene finidng.	HMMs	Burge97, HMM_algs
9	19.4.	JK	Gene expression profiling.	DGE	Love14
10	26.4.	JK	RNA secondary structure prediction	RNA secondary	Eddy04, Durbin's book, ch 9,10
11	3.5.	JK	Modeling of higher protein structures, protein databases.	Protein folding	AlphaFold, Dill12, Rost98, Lathorp96, Threading
12	10.5.	JK	Gene ontology, gene/protein function prediction.	Gene ontology	GOingStrong19, GOLabeler, GSEA
13	17.5.	JK	Network inference and modeling.	Network inference	Sachs05