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courses:bin:program [2024/02/19 10:19]
klema
courses:bin:program [2024/02/19 10:19]
klema
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 |  8         ​| ​ 15.4.  |  JK  | Markov models, Markov chains. | {{bin_markov.pdf|Markov chains}}| Durbin'​s book, ch 3 |  ​ |  8         ​| ​ 15.4.  |  JK  | Markov models, Markov chains. | {{bin_markov.pdf|Markov chains}}| Durbin'​s book, ch 3 |  ​
 |  9         ​| ​ 22.4.  |  JK  | Hidden Markov models, profile HMMs, gene finidng. | {{bin_hmm.pdf|HMMs}} | [[https://​www.cs.princeton.edu/​~bee/​courses/​read/​burge-jmb-1997.pdf|Burge97]],​ {{ :​courses:​bin:​hmms-1.pdf |HMM_algs}} |  ​ |  9         ​| ​ 22.4.  |  JK  | Hidden Markov models, profile HMMs, gene finidng. | {{bin_hmm.pdf|HMMs}} | [[https://​www.cs.princeton.edu/​~bee/​courses/​read/​burge-jmb-1997.pdf|Burge97]],​ {{ :​courses:​bin:​hmms-1.pdf |HMM_algs}} |  ​
-|  10        |  ​2.5.  |  JK  | Gene expression profiling. | {{:​courses:​bin:​bin_dge.pdf |DGE}} | [[https://​genomebiology.biomedcentral.com/​articles/​10.1186/​s13059-014-0550-8|Love14]] |+|  10        |  ​29.4.  |  JK  | Gene expression profiling. | {{:​courses:​bin:​bin_dge.pdf |DGE}} | [[https://​genomebiology.biomedcentral.com/​articles/​10.1186/​s13059-014-0550-8|Love14]] |
 |  11        |  9.5.  |  JK  | Gene ontology, gene/​protein function prediction. | {{ :​courses:​bin:​bin_go.pdf |Gene ontology}} | [[https://​www.repository.cam.ac.uk/​bitstream/​handle/​1810/​289177/​gky1055.pdf?​sequence=1|GOingStrong19]],​ [[https://​academic.oup.com/​bioinformatics/​article/​34/​14/​2465/​4924212?​login=true|GOLabeler]],​ [[https://​www.pnas.org/​content/​102/​43/​15545|GSEA]] | |  11        |  9.5.  |  JK  | Gene ontology, gene/​protein function prediction. | {{ :​courses:​bin:​bin_go.pdf |Gene ontology}} | [[https://​www.repository.cam.ac.uk/​bitstream/​handle/​1810/​289177/​gky1055.pdf?​sequence=1|GOingStrong19]],​ [[https://​academic.oup.com/​bioinformatics/​article/​34/​14/​2465/​4924212?​login=true|GOLabeler]],​ [[https://​www.pnas.org/​content/​102/​43/​15545|GSEA]] |
 |  12        |  14.5.  |   ​JK ​ | RNA secondary structure prediction | {{bin_strucrna.pdf|RNA secondary}} | [[https://​www.molgen.mpg.de/​3710236/​eddy2004.pdf|Eddy04]],​ [[https://​www.pnas.org/​doi/​epdf/​10.1073/​pnas.2112677119|Vicens22]],​ Durbin'​s book, ch 9,10 | |  12        |  14.5.  |   ​JK ​ | RNA secondary structure prediction | {{bin_strucrna.pdf|RNA secondary}} | [[https://​www.molgen.mpg.de/​3710236/​eddy2004.pdf|Eddy04]],​ [[https://​www.pnas.org/​doi/​epdf/​10.1073/​pnas.2112677119|Vicens22]],​ Durbin'​s book, ch 9,10 |
courses/bin/program.txt · Last modified: 2024/02/26 17:31 by klema