CourseWare Wiki
Search
Log In
b232
courses
bin
program
Differences
This shows you the differences between two versions of the page.
View differences:
Side by Side
Inline
Go
Link to this comparison view
Both sides previous revision
Previous revision
2024/02/26 17:31 klema
2024/02/19 10:20 klema
2024/02/19 10:19 klema
2024/02/19 10:19 klema
2024/02/19 10:18 klema
2024/02/19 10:15 klema
2024/02/09 10:17 external edit
Go
2024/02/26 17:31 klema
2024/02/19 10:20 klema
2024/02/19 10:19 klema
2024/02/19 10:19 klema
2024/02/19 10:18 klema
2024/02/19 10:15 klema
2024/02/09 10:17 external edit
Go
Next revision
Both sides next revision
courses:bin:program [2024/02/19 10:18]
klema
courses:bin:program [2024/02/19 10:19]
klema
Line 8:
Line 8:
| 5 | 18.3. | JK | Motif discovery. | {{ :courses:bin:bin_motif.pdf|Motif discovery}} | {{http://146.6.100.192/users/BCH339N_2018/nbt0806-959-primer-howdoesmotifdiscoverywork.pdf|Dhaeseleer06}} |
| 5 | 18.3. | JK | Motif discovery. | {{ :courses:bin:bin_motif.pdf|Motif discovery}} | {{http://146.6.100.192/users/BCH339N_2018/nbt0806-959-primer-howdoesmotifdiscoverywork.pdf|Dhaeseleer06}} |
| 6 | 25.3. | JK | Phylogenetic trees, hierarchical clustering. | {{ :courses:bin:bin_phylo.pdf |phylogeny}} | Durbin's book, ch 7 |
| 6 | 25.3. | JK | Phylogenetic trees, hierarchical clustering. | {{ :courses:bin:bin_phylo.pdf |phylogeny}} | Durbin's book, ch 7 |
-
|
7
| 1.4. | - | //Easter Monday// |
+
|
-
| 1.4. | - | //Easter Monday// |
-
|
-
|
9
.4. | JK | Phylogenetic trees, parsimony and probabilistic methods. | see the previous lecture | Durbin's book, ch 8 |
+
|
7
|
8
.4. | JK | Phylogenetic trees, parsimony and probabilistic methods. | see the previous lecture | Durbin's book, ch 8 |
-
| 8 |
16
.4. | JK | Markov models, Markov chains. | {{bin_markov.pdf|Markov chains}}| Durbin's book, ch 3 |
+
| 8 |
15
.4. | JK | Markov models, Markov chains. | {{bin_markov.pdf|Markov chains}}| Durbin's book, ch 3 |
-
| 9 |
23
.4. | JK | Hidden Markov models, profile HMMs, gene finidng. | {{bin_hmm.pdf|HMMs}} | [[https://www.cs.princeton.edu/~bee/courses/read/burge-jmb-1997.pdf|Burge97]], {{ :courses:bin:hmms-1.pdf |HMM_algs}} |
+
| 9 |
22
.4. | JK | Hidden Markov models, profile HMMs, gene finidng. | {{bin_hmm.pdf|HMMs}} | [[https://www.cs.princeton.edu/~bee/courses/read/burge-jmb-1997.pdf|Burge97]], {{ :courses:bin:hmms-1.pdf |HMM_algs}} |
-
| 10 |
3
.5. | JK | Gene expression profiling. | {{:courses:bin:bin_dge.pdf |DGE}} | [[https://genomebiology.biomedcentral.com/articles/10.1186/s13059-014-0550-8|Love14]] |
+
| 10 |
2
.5. | JK | Gene expression profiling. | {{:courses:bin:bin_dge.pdf |DGE}} | [[https://genomebiology.biomedcentral.com/articles/10.1186/s13059-014-0550-8|Love14]] |
-
| 11 |
8
.5. | JK | Gene ontology, gene/protein function prediction. | {{ :courses:bin:bin_go.pdf |Gene ontology}} | [[https://www.repository.cam.ac.uk/bitstream/handle/1810/289177/gky1055.pdf?sequence=1|GOingStrong19]], [[https://academic.oup.com/bioinformatics/article/34/14/2465/4924212?login=true|GOLabeler]], [[https://www.pnas.org/content/102/43/15545|GSEA]] |
+
| 11 |
9
.5. | JK | Gene ontology, gene/protein function prediction. | {{ :courses:bin:bin_go.pdf |Gene ontology}} | [[https://www.repository.cam.ac.uk/bitstream/handle/1810/289177/gky1055.pdf?sequence=1|GOingStrong19]], [[https://academic.oup.com/bioinformatics/article/34/14/2465/4924212?login=true|GOLabeler]], [[https://www.pnas.org/content/102/43/15545|GSEA]] |
| 12 | 14.5. | JK | RNA secondary structure prediction | {{bin_strucrna.pdf|RNA secondary}} | [[https://www.molgen.mpg.de/3710236/eddy2004.pdf|Eddy04]], [[https://www.pnas.org/doi/epdf/10.1073/pnas.2112677119|Vicens22]], Durbin's book, ch 9,10 |
| 12 | 14.5. | JK | RNA secondary structure prediction | {{bin_strucrna.pdf|RNA secondary}} | [[https://www.molgen.mpg.de/3710236/eddy2004.pdf|Eddy04]], [[https://www.pnas.org/doi/epdf/10.1073/pnas.2112677119|Vicens22]], Durbin's book, ch 9,10 |
| 13 | 21.5. | JK | Modeling of higher protein structures, protein databases. | {{ :courses:bin:bin_folding.pdf |Protein folding}} | [[https://www.nature.com/articles/s41586-021-03819-2|AlphaFold2]], [[https://www.academia.edu/5023856/The_Protein-Folding_Problem_50_Years_On|Dill12]], {{rost.pdf|Rost98}}, [[https://www.biostat.wisc.edu/bmi776/spring-17/papers/lathrop.pdf|Lathorp96]], {{threading-2p.pdf|Threading}} |
| 13 | 21.5. | JK | Modeling of higher protein structures, protein databases. | {{ :courses:bin:bin_folding.pdf |Protein folding}} | [[https://www.nature.com/articles/s41586-021-03819-2|AlphaFold2]], [[https://www.academia.edu/5023856/The_Protein-Folding_Problem_50_Years_On|Dill12]], {{rost.pdf|Rost98}}, [[https://www.biostat.wisc.edu/bmi776/spring-17/papers/lathrop.pdf|Lathorp96]], {{threading-2p.pdf|Threading}} |
courses/bin/program.txt
· Last modified: 2024/02/26 17:31 by
klema