Tutorials

Tutorial Date Tutor Topic Links
1 17.2. PR Introduction, first assignment, bioinformatics databases Tutorial 1
2 24.2. PR de Bruijn graphs and OLC approaches, Velvet tutorial Tutorial 2
3 3.3. PR Sequence alignment, second assignment Tutorial 3
4 10.3. PR BLAST, Star alignment, Clustal Omega. Tutorial 4
5 17.3. JK Motif discovery. Tutorial 12
6 24.3. PR Phylogenetic trees - distance based methods Tutorial 5
7 31.3. PR Phylogenetic trees - parsimony and probabilistic approaches Tutorial 6
8 7.4. PR Hidden Markov models. Third assignment Tutorial 7
9 14.4. PR Hidden Markov models, Fourth assignment Tutorial 8
- 21.4. - Easter Monday
10 28.4. PR Gene expression analysis Tutorial 9
11 5.5. JK Gene Ontology – enrichment analysis. Tutorial 10
12 12.5. JK Gene Ontology – protein annotation. Fifth assignment. Assignment 5
13 19.5. JK Protein structure prediction – homology, ESMFold. Tutorial 11

Assignment list

Assignment Alternative assignment Points
WEB SEARCH No choice 5 p.
BLAST ALIGNMENT SEQUENCE ASSEMBLY 15 p.
CpG-ISLAND RECOGNITION Exons 5 p.
GENE FINDING Exons 15 p.
PROTEIN FUNCTION PREDICTION Three options to approach 10 p.