Tutorials

Tutorial Date Tutor Topic Links
1 14.2. PR Introduction, first assignment, bioinformatics databases Tutorial 1
2 21.2. PR de Bruijn graphs and OLC approaches, Velvet tutorial Tutorial 2
3 28.2. PR Sequence alignment, second assignment Tutorial 3
4 7.3. PR BLAST, Star alignment, Clustal Omega. Tutorial 4
5 14.3. PR Phylogenetic trees - distance based methods Tutorial 5
6 21.3. PR Phylogenetic trees - parsimony and probabilistic approaches Tutorial 6
7 28.3. PR Hidden Markov models. Third assignment Tutorial 7
8 4.4. PR Hidden Markov models, Fourth assignment Tutorial 8
9 11.4. PR Gene expression analysis Tutorial 9
- 18.4. - Easter Monday
10 25.4. JK Gene Ontology – enrichment analysis. Tutorial 10
11 2.5. JK Gene Ontology – protein annotation. Fifth assignment. Assignment 5
12 9.5. JK Protein structure prediction, Modeller. Tutorial 11
13 16.5. JK Motif discovery. Tutorial 12
14 - JK Wrap up, submissions, credits, exam.

Assignment list

Assignment Alternative assignment Points
WEB SEARCH No choice 5 p.
SEQUENCE ALIGNMENT BLAST ALIGNMENT 15 p.
CpG-ISLAND RECOGNITION Exons 5 p.
GENE FINDING Exons 15 p.
PROTEIN FUNCTION PREDICTION Three options to approach 10 p.