Tutorials

Tutorial Date Tutor Topic Links
1 19.2. PR Introduction, first assignment, bioinformatics databases Tutorial 1
2 26.2. PR de Bruijn graphs and OLC approaches, Velvet tutorial Tutorial 2
3 4.3. PR Sequence alignment, second assignment Tutorial 3
4 11.3. PR BLAST, Star alignment, Clustal Omega. Tutorial 4
5 18.3. JK Motif discovery. Tutorial 12
6 25.3. PR Phylogenetic trees - distance based methods Tutorial 5
- 1.4. - Easter Monday
7 8.4. PR Phylogenetic trees - parsimony and probabilistic approaches Tutorial 6
8 15.4. PR Hidden Markov models. Third assignment Tutorial 7
9 22.4. PR Hidden Markov models, Fourth assignment Tutorial 8
10 29.4. PR Gene expression analysis Tutorial 9
11 6.5. JK Gene Ontology – enrichment analysis. Tutorial 10
12 13.5. JK Gene Ontology – protein annotation. Fifth assignment. Assignment 5
13 20.5. JK Protein structure prediction, Modeller. Tutorial 11

Assignment list

Assignment Alternative assignment Points
WEB SEARCH No choice 5 p.
BLAST ALIGNMENT SEQUENCE ASSEMBLY 15 p.
CpG-ISLAND RECOGNITION Exons 5 p.
GENE FINDING Exons 15 p.
PROTEIN FUNCTION PREDICTION Three options to approach 10 p.
courses/bin/tutorials/start.txt · Last modified: 2024/02/14 16:10 by rysavpe1