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courses:bin:program [2019/05/29 12:55]
klema
courses:bin:program [2019/06/10 10:53]
klema
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 ^  Lecture ​ ^  Date    ^  Lecturer ​ ^  Topics ​ ^  Slides ​  ​^ ​ References ​ ^ ^  Lecture ​ ^  Date    ^  Lecturer ​ ^  Topics ​ ^  Slides ​  ​^ ​ References ​ ^
 |  1         ​| ​ 18.2.   ​| ​ JK  | Intro, sample bioinformatics tasks. | {{intro_2019.pdf|intro}} | |  1         ​| ​ 18.2.   ​| ​ JK  | Intro, sample bioinformatics tasks. | {{intro_2019.pdf|intro}} |
-|  2         ​| ​ 25.2.  |  JS  | Biological sequence alignment. | {{pairwise_alignment_jk_ms.pdf|alignment}},​ {{linear-space-alignment.pdf|linear space}} | Durbin'​s book, ch 2,6 | +|  2         ​| ​ 25.2.  |  JS  | Biological sequence alignment. | {{pairwise_alignment_jk_ms.pdf|alignment}}, {{{{pairwise_alignment_jk_2017_2p.pdf |}}|alignment_2p}}, {{linear-space-alignment.pdf|linear space}} | Durbin'​s book, ch 2,6 | 
 |  3         ​| ​ 4.3.  |  JK  | BLAST algorithm and its modifications. | {{multiple_alignment_mod.pdf|multi align}}, {{blast_jk_2017_2p.pdf|BLAST}} |[[http://​users.cis.fiu.edu/​~giri/​teach/​Bioinf/​Papers/​GappedBLASTPaperNAR97.pdf|Altschul97]] | |  3         ​| ​ 4.3.  |  JK  | BLAST algorithm and its modifications. | {{multiple_alignment_mod.pdf|multi align}}, {{blast_jk_2017_2p.pdf|BLAST}} |[[http://​users.cis.fiu.edu/​~giri/​teach/​Bioinf/​Papers/​GappedBLASTPaperNAR97.pdf|Altschul97]] |
 |  4         ​| ​ 11.3.  |  JK  | Sequencing algorithms, fragment assembly. | {{assembly_jk_2017_2p.pdf|assembly}} | [[http://​vps.fmvz.usp.br/​labmas/​wp-content/​uploads/​2014/​04/​Artigo_3.2.pdf|Nagarajan13]],​ [[http://​profs.scienze.univr.it/​~liptak/​MBD/​files/​nbt.2023.pdf|Compeau11]] | |  4         ​| ​ 11.3.  |  JK  | Sequencing algorithms, fragment assembly. | {{assembly_jk_2017_2p.pdf|assembly}} | [[http://​vps.fmvz.usp.br/​labmas/​wp-content/​uploads/​2014/​04/​Artigo_3.2.pdf|Nagarajan13]],​ [[http://​profs.scienze.univr.it/​~liptak/​MBD/​files/​nbt.2023.pdf|Compeau11]] |
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 |  11        |  6.5.  |  JK   | Modeling of higher protein structures, protein databases. | {{protein-structure-2p.pdf|Protein structure prediction}},​ {{threading-2p.pdf|Threading}} ​ | [[https://​www.academia.edu/​5023856/​The_Protein-Folding_Problem_50_Years_On|Dill12]],​ {{rost.pdf|Rost98}},​ [[https://​www.biostat.wisc.edu/​bmi776/​spring-17/​papers/​lathrop.pdf|Lathorp96]] | |  11        |  6.5.  |  JK   | Modeling of higher protein structures, protein databases. | {{protein-structure-2p.pdf|Protein structure prediction}},​ {{threading-2p.pdf|Threading}} ​ | [[https://​www.academia.edu/​5023856/​The_Protein-Folding_Problem_50_Years_On|Dill12]],​ {{rost.pdf|Rost98}},​ [[https://​www.biostat.wisc.edu/​bmi776/​spring-17/​papers/​lathrop.pdf|Lathorp96]] |
 |  12        |  13.5.  |  JK  | Gene ontology, gene/​protein function prediction. | {{GFP-Intro.pdf}} | |  12        |  13.5.  |  JK  | Gene ontology, gene/​protein function prediction. | {{GFP-Intro.pdf}} |
-|  13        |  20.5.   ​| ​ JS  | Network inference and modeling. | {{networkinference_2p.pdf|Netwrok ​inference}} | {{science-2005-sachs-523-9.pdf|Sachs05}} |+|  13        |  20.5.   ​| ​ JS  | Network inference and modeling. | {{networkinference_2p.pdf|Network ​inference}} | {{science-2005-sachs-523-9.pdf|Sachs05}} |
  
courses/bin/program.txt · Last modified: 2019/06/10 10:54 by klema