====== ZSL Zobrazovací systémy v lékařství / Medical Imaging Systems ====== ===== Přednášky / Lectures ===== /* Pondělí 9:15-10:45, KN:E-107 */ /* Ve středu 9:15-10:45, v místnosti KN:E-126 na Karlově náměstí. */ Monday /*(exceptionally other days, marked in red below)*/, 14:30-16:00, room KN:E-301, Charles square. /* Úterý 12:45-14:15, KN:E-107 (výjimečně pondělí 9:15-10:45, KN:E-107) */ Přednášející/Lecturers: [[http://cmp.felk.cvut.cz/~kybic/|Jan Kybic]] (JK), [[https://usermap.cvut.cz/profile/b0c4dd41-3876-4e3a-83e2-aed4eb41138d|André Sopczak]] (AS), /* [[http://cmp.felk.cvut.cz/~herinjan|Jan Hering]] (JH) */ /* [[http://cmp.felk.cvut.cz/~flachbor/|Boris Flach]] (BF) */ /* [[https://www.irisa.fr/visages/members/former/jan.petr/index|Jan Petr]] (JP) */ [[https://scholar.google.com/citations?user=qS-vflwAAAAJ&hl=en&oi=ao|Jan Petr]] (JP) [[https://is.cuni.cz/webapps/whois2/osoba/1362490000459074|Robert Holaj]] (RH) /* [[http://mmtg.fel.cvut.cz/personal/pata/|Petr Páta]] (PP)*/ The schedule is preliminary and may be changed. Updated study materials will appear here before the lecture. ^Č. ^ Datum ^ Přednáší ^ Zdroje ^ Téma ^ ^No ^ Date ^ Lecturer ^ Resources ^ Topic ^ ^ 1| 19.2. | AS | {{mri1enas.pdf|slides}}, {{mri1en.pdf|previous slides}}, [[https://bbb04.felk.cvut.cz//playback/presentation/2.0/playback.html?meetingId=78367caf423658a7c718d3f56f94c3ccfc4828a2-1617174001791|recorded lecture from 2021, MRI1]], [[http://www.cis.rit.edu/htbooks/mri/|Hornak:The Basics of MRI,chapters 1-3]], [[https://ebookcentral.proquest.com/lib/cvut/detail.action?docID=1438164&query=medical+imaging|Webb's Physics of Medical Imaging, 2nd ed.,chapter 7.1-7.3]] [[ https://youtu.be/C_mhZYzMTBc|commented MRI lecture from 2020, MRI part I]] | Magnetic resonance imaging (MRI) - introduction, principles, excitation, relaxation | ^ 2| 26.2.| AS | {{mri2enas.pdf|slides}}, {{mri2en.pdf|previous slides}}, [[https://bbb04.felk.cvut.cz//playback/presentation/2.0/playback.html?meetingId=f423c34d0e1a424bf7373fd594f1f54d28029fa5-1617778801907|recorded lecture from 2021, MRI2]][[http://www.cis.rit.edu/htbooks/mri/|Hornak:The Basics of MRI,chapters 4-7]], [[https://ebookcentral.proquest.com/lib/cvut/detail.action?docID=1438164&query=medical+imaging|Webb's Physics of Medical Imaging, 2nd ed.,chapters 7.4-7.6.8]] [[https://youtu.be/S4DDkOWxNj8|commented MRI lecture from 2020, MRI part II]] | MRI (part II) - spin-echo, Fourier imaging | ^ 3| 4.3. | JK | {{ :courses:zsl:mri3en.pdf |slides}}, [[http://www.cis.rit.edu/htbooks/mri/|Hornak:The Basics of MRI,chapters 8-15]], [[https://bbb04.felk.cvut.cz//playback/presentation/2.0/playback.html?meetingId=170d00cc4df6ff2d6f8285396e7c72a8838f0aea-1618383603241|recorded lecture from 2021, MRI part IV]], [[https://youtu.be/K5UObsYDGMU|commented 3rd MRI lecture from 2020]], [[https://youtu.be/muWAy5JPXow|commented 4th MRI lecture from 2020]],[[https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/476931/MRI_guidance_2015_-_4-02d1.pdf|FDA MRI guidelines]], [[https://ebookcentral.proquest.com/lib/cvut/detail.action?docID=1438164&query=medical+imaging|Webb's Physics of Medical Imaging, 2nd ed.,chapters 7.6-7.12]], [[https://bbb04.felk.cvut.cz//playback/presentation/2.0/playback.html?meetingId=f960270b5c41939a6127f727891d40f442335bf6-1618988401411| recorded lecture from 2021, MRI part V]], [[https://youtu.be/akhw5-s6qBE|commented 5th MRI lecture from 2020]], [[https://bbb04.felk.cvut.cz//playback/presentation/2.0/playback.html?meetingId=5dd886d0ad282891b4c8dbe405fd2396fb93cf69-1619593201190|recorded lecture from 2021, MRI part V]] | MRI (part III) - advanced techniques | ^ 4| 11.3. | JP | {{:courses:zsl:fmri_jp.pptx|fMRI slides in pptx}}, {{fmri.pdf|slides in pdf}}, [[https://bbb04.felk.cvut.cz//playback/presentation/2.0/playback.html?meetingId=f94f43975f88c04a31df28ab05ecf8934932b58f-1620198001553|recorded lecture from 2021, MRI part III]], [[https://youtu.be/cgVMl8z3Efg|commented fMRI lecture from 2020]], [[https://courses.lsa.umich.edu/fmri-training-course/lecture-recordings/|fMRI course U. Michigan]], [[https://www.biac.duke.edu/education/courses/fall04/fmri/|fMRI course Neurobio]] | Functional MRI (fMRI) | ^ 5| 18.3. | AS | {{ :courses:zsl:us1as.pdf |US slides (part 1)}},{{ :courses:zsl:us1.pdf |previous slides}}, [[https://ebookcentral.proquest.com/lib/cvut/detail.action?docID=1438164&query=medical+imaging|Webb's Physics of Medical Imaging, chapter 6]], [[https://onlinelibrary.wiley.com/doi/book/10.1002/9780470918548|Medical image analysis, chapter 7]], [[https://bbb04.felk.cvut.cz//playback/presentation/2.0/playback.html?meetingId=1c145a51c30574fccb8907cfa4f55edc93616d20-1615968001945|recorded lecture from 2021]], [[https://youtu.be/QnyjceDa6p0|commented first part of the lecture from 2020]], [[http://folk.ntnu.no/stoylen/strainrate/Basic_ultrasound|Basic ultrasound for clinicians]] | Ultrasound - principles, generation and detection | ^ 6| 25.3. | AS | {{ :courses:zsl:us2as.pdf |US slides (part 2)}},{{ :courses:zsl:us2.pdf |previous slides}}, [[https://bbb04.felk.cvut.cz//playback/presentation/2.0/playback.html?meetingId=df72a60d0c4f15722e255e382810aac61390862b-1616572801138|recorded lecture from 2021]], [[https://youtu.be/2Ork1XzWYYw|commented second part of the lecture from 2020]], [[http://folk.ntnu.no/stoylen/strainrate/Basic_Doppler_ultrasound|Basic Doppler ultrasound]] | Ultrasound - Doppler imaging, contrast enhancement, 3D | ^ | 1.4. | | | // Velikonoce / Easter holidays // | ^ 7| 8.4. | RH | {{ :courses:zsl:echocardiography.pptx |slides from the lecture}} | Medical applications of ultrasound, case studies. | ^ 8| 15.4. | JK | {{ :courses:zsl:x-rays.pdf|slides}}, [[https://ebookcentral.proquest.com/lib/cvut/detail.action?docID=1438164&query=medical+imaging|Webb's Physics of Medical Imaging, 2nd ed., chapter 2]], {{ :courses:zsl:c3-phys.pdf |J.Fessler: Physics of Projection Radiography}}, [[https://bbb04.felk.cvut.cz//playback/presentation/2.0/playback.html?meetingId=cf60643762ff2193f1d102ddd1d2d2c32556667f-1614153601572|recorded lecture from 2021]] | X-ray, detection, sources, medical X-ray | ^ 9| 22.4. | JK | {{ :courses:zsl:ct1.pdf |slides}} [[https://ebookcentral.proquest.com/lib/cvut/detail.action?docID=1438164&query=medical+imaging|Webb's Physics of Medical Imaging, chapter 3]], [[https://bbb04.felk.cvut.cz//playback/presentation/2.0/playback.html?meetingId=2ae43a4567ef1ee472fc04c5b68fc3ebb8d15ab3-1614758401226|recorded lecture from 2021]], CT mouse [[http://cern.ch/sopczak/animAXIAL.avi | axial]] [[http://cern.ch/sopczak/animFRONT.avi | front]] [[http://cern.ch/sopczak/animSAGITrot.avi | sagit rotation]] | Computed tomography (CT) - principles, Radon transform | ^ 10| 29.4. | JK | {{ :courses:zsl:ct2.pdf |slides}}, [[https://engineering.purdue.edu/~malcolm/pct/|Kak,Slaney, chapters 3,4,7]], {{ :courses:zsl:c-tomo.pdf |J.Fessler: Analytical Tomographic Image Reconstruction Methods}}, [[https://courses.healthtech.dtu.dk/22485/notes/AlgebraicIterativeMethods31545.pdf|course at TU Denmark]], [[https://bbb04.felk.cvut.cz//playback/presentation/2.0/playback.html?meetingId=8481890a2906435ddcd291d18683af90f653cc93-1615363202169|recorded lecture from 2021]] [[https://youtu.be/8pVE4zQFX8s|commented second part of the lecture from 2020]] | CT (part II) - filtered backpropagation, algebraic reconstruction, 3D CT, safe dose. | ^ 11| 6.5. | JK | {{microscopy.pdf|slides}}, {{davidson-abramowitz-optical_microscopy.pdf|article Davidson-Abramowitz}}, [[https://bbb04.felk.cvut.cz//playback/presentation/2.0/playback.html?meetingId=fc5253a16154356252c54a3ab6408bb94e1bd814-1613549607416|recorded lecture from 2021]] | Microscopy | ^ 12| 13.5. | JK | {{ :courses:zsl:petspectAS.pdf |slides}} {{ :courses:zsl:petspecten.pdf | (older slides)}}, [[https://bbb04.felk.cvut.cz/playback/presentation/2.3/b0fff4e924089f57c3742084539e35c516f0fde0-1621407601581?meetingId=b0fff4e924089f57c3742084539e35c516f0fde0-1621407601581|recorded PET/SPECT lecture from 2021]], [[https://youtu.be/pZ205I75_Ic|commented PET/SPECT lecture from 2020]], [[https://ebookcentral.proquest.com/lib/cvut/detail.action?docID=1438164&query=medical+imaging|Webb's Physics of Medical Imaging, 2nd ed.,kapitola 5]], [[https://www.people.vcu.edu/~mhcrosthwait/|Nuclear medicine lectures from VCU]][[http://eknygos.lsmuni.lt/springer/360/1-117.pdf|PET book by Cherry and Dahlbom]] | Nuclear imaging (PET, SPECT) | ^ 13| 20.5. | JK | // see above // | reserve, Nuclear imaging (PET, SPECT, part 2) or other imaging methods | =====Evaluation ===== *Information about the [[ZkouskaZSL|exam]]. =====Study materials / References ===== * // Lecture slides and other resources mentioned in the table above. // * Flowe, M. A., Webb, S.: [[https://ebookcentral.proquest.com/lib/cvut/detail.action?docID=1438164&query=medical+imaging|Webb's Physics of Medical Imaging, 2nd ed.]], Chapman and Hall/CRC, 2012. e-kniha k dispozici v rámci ČVUT. // e-book available for CTU // * Kak, Slaney: [[https://engineering.purdue.edu/~malcolm/pct/|Principles of Computerized Tomographic Imaging]] // e-book free for personal use // * Webb A., Introduction to Biomedical Imaging. IEEE Press, 2003. * Zuna, Poušek, Úvod do zobrazovacích metod v lékařské diagnostice. Skriptum ČVUT, 2002. * Dhawan, A. Medical Image Analysis. IEEE Press, 2003. // [[https://aleph.cvut.cz/F/YE57FEBMAU47KVN63KV6UQQ4BN12137KXTPPR75G6U2YXB56NL-02490?func=full-set-set&set_number=985108&set_entry=000056&format=999|e-book available for CTU]] // * Svatoš, J., Zobrazovací systémy v lékařství, skriptum ČVUT, 1998 * Cho, Z.H., Jones, J.P., Singh, M. Foundations of Medical Imaging. New York: John Wiley&Sons, Inc. 1993 * Hornak, J.: [[http://www.cis.rit.edu/htbooks/mri/|The Basics of MRI]]. // Free online book. // * Kybic, J: {{:courses:zsl:kybic-kapitola12.pdf|Zobrazovací ́systémy v medicíně a zpracování obrazové informace v medicíně.}} Short summary in Czech. Access to some resources is limited to CTU IP addresses. To access them from other locations, use [[http://svti.fel.cvut.cz/cz/services/vpn.html|VPN]].