==== Tutorials =====

^ Tutorial   ^  Date  ^ Tutor ^ Topic ^ Links ^                             
|  1         |  19.2.| PR  | Introduction, first assignment, bioinformatics databases | [[courses:bin:tutorials:tutorial1|Tutorial 1]] |
|  2         |  26.2.| PR  | de Bruijn graphs and OLC approaches, Velvet tutorial | [[courses:bin:tutorials:tutorial2|Tutorial 2]] |
|  3         |   4.3.| PR | Sequence alignment, second assignment | [[courses:bin:tutorials:tutorial3|Tutorial 3]] |
|  4         |  11.3.| PR  | BLAST, Star alignment, Clustal Omega. | [[courses:bin:tutorials:tutorial4|Tutorial 4]] |
|  5         |  18.3.| JK  | Motif discovery. |[[courses:bin:tutorials:tutorial12|Tutorial 12]] |
|  6         |  25.3.| PR | Phylogenetic trees - distance based methods | [[courses:bin:tutorials:tutorial5|Tutorial 5]]  |
|  -         |   1.4.| -  | //Easter Monday// |
|  7         |   8.4.| PR  | Phylogenetic trees - parsimony and probabilistic approaches | [[courses:bin:tutorials:tutorial6|Tutorial 6]] |
|  8         |  15.4.| PR | Hidden Markov models. Third assignment | [[courses:bin:tutorials:tutorial7|Tutorial 7]] |
|  9         |  22.4.| PR  | Hidden Markov models, Fourth assignment | [[courses:bin:tutorials:tutorial8|Tutorial 8]] |
|  10        |  29.4.| PR  | Gene expression analysis | [[courses:bin:tutorials:tutorial9|Tutorial 9]] |
|  11        |   6.5.| JK | Gene Ontology -- enrichment analysis. | [[courses:bin:tutorials:tutorial10|Tutorial 10]] |
|  12        |  13.5.| JK | Gene Ontology -- protein annotation. Fifth assignment. | [[courses:bin:assignments:hw5|Assignment 5]] |
|  13        |  20.5.| JK  | Protein structure prediction, Modeller. |[[courses:bin:tutorials:tutorial11|Tutorial 11]]| 



====Assignment list====
^ Assignment  ^ Alternative assignment   ^  Points    ^  
|[[../assignments/hw1|WEB SEARCH]]          | No choice | 5 p.  |
|[[../assignments/hw2b|BLAST ALIGNMENT]]  | [[../assignments/hw2a|SEQUENCE ASSEMBLY]] | 15 p. |
|[[../assignments/hw3|CpG-ISLAND RECOGNITION]]  | [[../assignments/hw34|Exons]] | 5 p.  |
|[[../assignments/hw4|GENE FINDING]]     | [[../assignments/hw34|Exons]] | 15 p. |
|[[../assignments/hw5|PROTEIN FUNCTION PREDICTION]]   | Three options to approach | 10 p. |